Also, on the doctor being in comic books - Qubit from Irredeemable is obviously modeled after tenth. But I dunno, outside of the trenchcoat, they don't seem to get the doctor. Not in the dialogue, not in the way he behaves (there's sort of a blatant attempt to push it when one of the characters emphasizes his "love for the earth" but feh, it seems forced.)

Only comic I have read (and bear in mind that I haven't read much) that seems to "get it" is one of the recent IDW comics with Eleventh, Amy, and Rory. Everything from the look to the script is immediately recognizable as Eleventh.

The story was about rory and amy checking out the data plan on the "phone that can call anywhere through time and space", which resulted in the time vortex bringing all of the spam mails to life.

There's also a band of merceneries led by a Danny Trejo lookalike. The doctor tricked all of them with the animated ms office stapler and a viagra adbot.